Tools
Online Pokedex counter made by BobChao87. Allows tracking of captured Pokemon, planned captures, and duplicate captures. Default dex is Gen 1 Complete, but is customizable for generations all the way up to Gen 7. (external link) (external link)
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A standalone, more customizable version of a Pokemon Tracker. Can customize the colors as well as add more counters that track differently marked Pokemon. Requires Java (direct download)
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Saves
Splits
Patches