I accidentally submitted my snake run to glitchless :/

edit: nevermind I'm retarded

I've been using livesplit to time my glitchless runs, and it doesn't seem to pause correctly during the loads. You can see the timer stop when the game is loading in the WR run and many other runs, but as you can see here I lose 5 seconds to a loading screen. What causes this?

Note: It has worked correctly for me in the past as you can see in this run: I'm not sure why it stopped working?