Is this game acceptable in doing runs for this table? It has some additional features that some might not be aware of (might include a separate option for either Full Tilt or Windows versions).

I'm aware that extra balls are awarded much more frequently and the bumpers are easier to upgrade in the Full Tilt version (there's probably others too). As far as accepting alongside the Windows version, I'm not quite sure what the mods think of that. But until then, I would just go ahead and submit whatever you've got, and the categories can always be adjusted at a later date if a problem arises.

From what i understand thats technically a different game. If you wanted to run that gane instead of space cadet because you dont have space cadet there is a download link in resources. If you still want to run full tilt then you will have to request it to be a new game.

Well, why not make subcategories for the Full Tilt version and the 3D Pinball version? Same table and layout, different rules.